diff --git a/services/history-v1/test/acceptance/js/storage/back_fill_file_hash.test.mjs b/services/history-v1/test/acceptance/js/storage/back_fill_file_hash.test.mjs
index 9f9168dddb..14a1c811d6 100644
--- a/services/history-v1/test/acceptance/js/storage/back_fill_file_hash.test.mjs
+++ b/services/history-v1/test/acceptance/js/storage/back_fill_file_hash.test.mjs
@@ -471,6 +471,10 @@ describe('back_fill_file_hash script', function () {
 
   async function prepareEnvironment() {
     await cleanup.everything()
+    // Manually remove the guard that is created after running the binary files migration.
+    await db
+      .collection('migrations')
+      .deleteOne({ name: '20250519101128_binary_files_migration' })
     await mockFilestore.start()
     await populateMongo()
     await populateHistoryV1()
diff --git a/services/history-v1/test/acceptance/js/storage/support/cleanup.js b/services/history-v1/test/acceptance/js/storage/support/cleanup.js
index f316b1ebad..c8b545cc2f 100644
--- a/services/history-v1/test/acceptance/js/storage/support/cleanup.js
+++ b/services/history-v1/test/acceptance/js/storage/support/cleanup.js
@@ -20,7 +20,6 @@ const MONGO_COLLECTIONS = [
   'deletedProjects',
   'projects',
   'projectHistoryBackedUpBlobs',
-  'migrations',
 ]
 
 // make sure we don't delete the wrong data by accident